BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB017E08LP1|AL427173
(994 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1399 1625 0.0
3x_Contig1302 377 e-104
3x_Contig1566 198 1e-50
3x_Contig1138 113 7e-25
>3x_Contig1399
Length = 7157
Score = 1625 bits (819), Expect = 0.0
Identities = 837/841 (99%), Gaps = 2/841 (0%)
Strand = Plus / Plus
Query: 156 tgaaatcgccccaatcttgtgtgccggtgttaccgtttacaaggctttgaagaccgctga 215
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 tgaaatcgccccaatcttgtgtgccggtgttaccgtttacaaggctttgtagaccgctga 60
Query: 216 cttgaaaccaggccaatgggttgctatctccggtgctgccggtggtttaggttcccttgc 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttgaaaccaggccaatgggttgctatctccggtgctgccggtggtttaggttcccttgc 120
Query: 276 tgtgcaatacgccaaggccatgggtttgagagtcctaggtattgacggtggtgatggtaa 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgtgcaatacgccaaggccatgggtttgagagtcctaggtattgacggtggtgatggtaa 180
Query: 336 ggaagaattgttcaagcaatgtggtggtgaagtcttcatcgacttcagaaagtctaagga 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggaagaattgttcaagcaatgtggtggtgaagtcttcatcgacttcagaaagtctaagga 240
Query: 396 catggtcgccgatatccaagaagctaccaacggtggtcctcacggtgtcattaacgtctc 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 catggtcgccgatatccaagaagctaccaacggtggtcctcacggtgtcattaacgtctc 300
Query: 456 cgtctccgaggctgctatctccatgtctaccgaatacgttagaccaaccggtgttgttgt 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgtctccgaggctgctatctccatgtctaccgaatacgttagaccaaccggtgttgttgt 360
Query: 516 cttggtcggtttgccagctgacgcttacgtcaagtccgaagtcttctcccacgtcgttaa 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cttggtcggtttgccagctgacgcttacgtcaagtccgaagtcttctcccacgtcgttaa 420
Query: 576 gtccatctccatcaagggttcttacgtcggtaacagagctgacaccagagaagccaccga 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtccatctccatcaagggttcttacgtcggtaacagagctgacaccagagaagccaccga 480
Query: 636 cttcttcaccagaggtttggtcaagtctccaatcaagatcatcggtctatctgaattgcc 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cttcttcaccagaggtttggtcaagtctccaatcaagatcatcggtctatctgaattgcc 540
Query: 696 agaagcttatgaactaatggaacaaggtaagatcttgggtagattcgtcgttgacactta 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agaagcttatgaactaatggaacaaggtaagatcttgggtagattcgtcgttgacactta 600
Query: 756 caaataatcggattaattaaagaatgtgtccctcattagatttcttttctttatttaact 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 caaataatcggattaattaaagaatgtgtccctcattagatttcttttctttatttaact 660
Query: 816 cccattattacaaaaaaaattagtgcaagggaagagtctctcacctcttaacttaaaatg 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cccattattacaaaaaaaattagtgcaagggaagagtctctcacctcttaacttaaaatg 720
Query: 876 aaaaagaacaaacgtattcgccataatcatatcatcctcagcctcctattttaacaaact 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aaaaagaacaaacgtattcgccataatcatatcatcctcagcctcctattttaacaaact 780
Query: 936 cacacaacgattcgctctggctttatgaaccttg-caggcgtgtgtttt-wagaagaagt 993
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 781 cacacaacgattcgctctggctttatgaaccttgccaggcgtgtgttttaaagaagaagt 840
Query: 994 t 994
|
Sbjct: 841 t 841
>3x_Contig1302
Length = 5215
Score = 377 bits (190), Expect = e-104
Identities = 488/586 (83%), Gaps = 1/586 (0%)
Strand = Plus / Minus
Query: 57 gctgacttgtctggttacacccatgacggttctttccaacaatacgctaccgctgatgcc 116
||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 1983 gctgacttgtctggttacacccacgatggttctttccaacaatacgctaccgcagatgct 1924
Query: 117 gttcaagctgctcaaattccaaagggtaccgaatttggctgaaatcgccccaatcttgtg 176
||||||||||| ||||||||||||||||| ||||||||||| | || ||||| | ||
Sbjct: 1923 gttcaagctgccagaattccaaagggtaccg-atttggctgaagttgctccaattctatg 1865
Query: 177 tgccggtgttaccgtttacaaggctttgaagaccgctgacttgaaaccaggccaatgggt 236
|||||||||||| ||||||||||||||||| | ||| ||||||| | || | |||||
Sbjct: 1864 tgccggtgttactgtttacaaggctttgaaaagtgctaacttgaaggctggtgactgggt 1805
Query: 237 tgctatctccggtgctgccggtggtttaggttcccttgctgtgcaatacgccaaggccat 296
||| ||||| |||||||| |||||| ||||||| || ||||| |||||||||||||||||
Sbjct: 1804 tgccatctctggtgctgctggtggtctaggttctctagctgtccaatacgccaaggccat 1745
Query: 297 gggtttgagagtcctaggtattgacggtggtgatggtaaggaagaattgttcaagcaatg 356
||||| |||||| | ||||| ||||||||||| | |||| | ||| |||||||||
Sbjct: 1744 gggttacagagtcgttggtatcgacggtggtgaagaaaagggtaagttggtcaagcaatt 1685
Query: 357 tggtggtgaagtcttcatcgacttcagaaagtctaaggacatggtcgccgatatccaaga 416
|||||||||| ||| | || |||| || | ||||||||||| || || ||||||||
Sbjct: 1684 gggtggtgaagcctttgttgatttcaccaaaaccaaggacatggttgctgaaatccaaga 1625
Query: 417 agctaccaacggtggtcctcacggtgtcattaacgtctccgtctccgaggctgctatctc 476
| |||||||||||||| |||||||||||||||||||| || || || ||||| ||
Sbjct: 1624 aatcaccaacggtggtccacacggtgtcattaacgtctctgtttctgaagctgccatgaa 1565
Query: 477 catgtctaccgaatacgttagaccaaccggtgttgttgtcttggtcggtttgccagctga 536
| || || ||| ||| |||||||| ||| ||| || |||||||||||||||||||
Sbjct: 1564 cgcttccactcaattcgtcagaccaactggtactgtcgtattggtcggtttgccagctgg 1505
Query: 537 cgcttacgtcaagtccgaagtcttctcccacgtcgttaagtccatctccatcaagggttc 596
|| | |||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 1504 tgccgtcatcaagtccgaagtcttctcccacgtcgttaagtctattaacatcaagggttc 1445
Query: 597 ttacgtcggtaacagagctgacaccagagaagccaccgacttcttc 642
||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 1444 ttacgtcggtaacagagctgacaccagagaagctatcaacttcttc 1399
>3x_Contig1566
Length = 10355
Score = 198 bits (100), Expect = 1e-50
Identities = 224/264 (84%), Gaps = 1/264 (0%)
Strand = Plus / Minus
Query: 57 gctgacttgtctggttacacccatgacggttctttccaacaatacgctaccgctgatgcc 116
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct: 7572 gctgacttgtctggttacacccacgatggttctttccaacaatatgctaccgctgatgcc 7513
Query: 117 gttcaagctgctcaaattccaaagggtaccgaatttggctgaaatcgccccaatcttgtg 176
|||||||||||| ||||||||||||||||| ||||||||||| | || ||||| | ||
Sbjct: 7512 gttcaagctgctagaattccaaagggtaccg-atttggctgaagttgctccaattctatg 7454
Query: 177 tgccggtgttaccgtttacaaggctttgaagaccgctgacttgaaaccaggccaatgggt 236
||||||||||||||||||||||||| | || | ||||||||||| | || | |||||
Sbjct: 7453 tgccggtgttaccgtttacaaggctctaaaatctgctgacttgaaggccggtgactgggt 7394
Query: 237 tgctatctccggtgctgccggtggtttaggttcccttgctgtgcaatacgccaaggccat 296
||| || |||||||| |||||| ||||||| | ||| | |||||||||||||| ||
Sbjct: 7393 tgccatttccggtgcctgtggtggtctaggttctttggctatccaatacgccaaggctat 7334
Query: 297 gggtttgagagtcctaggtattga 320
||||| |||||| | ||||||||
Sbjct: 7333 gggttacagagtcttgggtattga 7310
>3x_Contig1138
Length = 5524
Score = 113 bits (57), Expect = 7e-25
Identities = 69/73 (94%)
Strand = Plus / Minus
Query: 55 aagctgacttgtctggttacacccatgacggttctttccaacaatacgctaccgctgatg 114
||||||||||||| |||||||| || |||||||||||||||||||||||||| |||||||
Sbjct: 4526 aagctgacttgtccggttacactcacgacggttctttccaacaatacgctactgctgatg 4467
Query: 115 ccgttcaagctgc 127
|||||||||||||
Sbjct: 4466 ccgttcaagctgc 4454
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6819
Number of Sequences: 1807
Number of extensions: 6819
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 4
length of query: 994
length of database: 10,358,551
effective HSP length: 16
effective length of query: 978
effective length of database: 10,329,639
effective search space: 10102386942
effective search space used: 10102386942
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)